Journal Articles

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Contents

Reviews

  • Tye KM and Deisseroth K. Optogenetic investigation of neural circuits underlying brain disease in animal models. Nat Rev Neur 13:251.
  • Schoenenberger P, Zhang Schärer YP, Oertner TG. 2010. Channelrhodopsin as a tool to study synaptic transmission and plasticity. Exp Physiol 96(1): 34-39.

Molecular Tools

  • Airan RD, Thompson KR, Fenno LE, Bernstein H, Deisseroth K. 2009. Temporally precise in vivo control of intracellular signalling. Nature 458:1025-9
  • Arenkiel BR, Peca J, Davison IG, Feliciano C, Deisseroth K, et al. 2007. In vivo light-induced activation of neural circuitry in transgenic mice expressing channelrhodopsin-2. Neuron 54:205-18
  • Atasoy D, Aponte Y, Su HH, Sternson SM. 2008. A FLEX switch targets Channelrhodopsin-2 to multiple cell types for imaging and long-range circuit mapping. J Neurosci 28:7025-30
  • Bamann C, Kirsch T, Nagel G, Bamberg E. 2008. Spectral characteristics of the photocycle of channelrhodopsin-2 and its implication for channel function. J Mol Biol 375:686-94
  • Banghart M, Borges K, Isacoff E, Trauner D, Kramer RH. 2004. Light-activated ion channels for remote control of neuronal firing. Nat Neurosci 7:1381-6
  • Berndt A, Yizhar O, Gunaydin LA, Hegemann P, Deisseroth K. 2008. Bi-stable neural state switches. Nat Neurosci 12:229-34
  • Berndt A, Schoenenberger P, Mattis J, Tye KM, Deisseroth K, Hegemann P, Oertner TG 2011. High-efficiency Channelrhodopsins for fast neuronal stimulation at low light levels. PNAS 108: 7595-7600.
  • Boyden ES, Zhang F, Bamberg E, Nagel G, Deisseroth K. 2005. Millisecond-timescale, genetically targeted optical control of neural activity. Nat Neurosci 8:1263-8
  • Chow BY, Han X, Dobry AS, Qian X, Chuong AS, et al. 2010. High-performance genetically targetable optical neural silencing by light-driven proton pumps. Nature 463:98-102
  • Diester I, Kaufman MT, Mogri M, Pashaie R, Goo W, et al. 2011. An optogenetic toolbox designed for primates. Nat Neurosci 14:387-97
  • Feldbauer K, Zimmermann D, Pintschovius V, Spitz J, Bamann C, Bamberg E. 2009. Channelrhodopsin-2 is a leaky proton pump. Proc Natl Acad Sci U S A 106:12317-22
  • Fiala A, Suska A, Schlüter OM. 2010. Optogenetic approaches in neuroscience. Curr Biol 20:R897-903
  • Gorostiza P, Volgraf M, Numano R, Szobota S, Trauner D, Isacoff EY. 2007. Mechanisms of photoswitch conjugation and light activation of an ionotropic glutamate receptor. Proc Natl Acad Sci U S A 104:10865-70
  • Gradinaru V, Zhang F, Ramakrishnan C, Mattis J, Prakash R, et al. 2010. Molecular and cellular approaches for diversifying and extending optogenetics. Cell
  • Grubb MS, Burrone J. 2010. Channelrhodopsin-2 localised to the axon initial segment. PLoS One 5:e13761
  • Gunaydin LA, Yizhar O, Berndt A, Sohal VS, Deisseroth K, Hegemann P. 2010. Ultrafast optogenetic control. Nat Neurosci
  • Han X, Boyden ES. 2007. Multiple-color optical activation, silencing, and desynchronization of neural activity, with single-spike temporal resolution. PLoS ONE 2:e299
  • Han X, Qian X, Bernstein JG, Zhou H, Franzesi GT, et al. 2009. Millisecond-timescale optical control of neural dynamics in the nonhuman primate brain. Neuron 62:191-8
  • Han X, Qian X, Stern P, Chuong AS, Boyden ES. 2009. Informational lesions: optical perturbation of spike timing and neural synchrony via microbial opsin gene fusions. Front Mol Neurosci 2:12
  • Ishizuka T, Kakuda M, Araki R, Yawo H. 2006. Kinetic evaluation of photosensitivity in genetically engineered neurons expressing green algae light-gated channels. Neurosci Res 54:85-94
  • Janovjak H, Szobota S, Wyart C, Trauner D, Isacoff EY. 2010. A light-gated, potassium-selective glutamate receptor for the optical inhibition of neuronal firing. Nat Neurosci 13:1027-32
  • Kuhlman SJ, Huang ZJ. 2008. High-resolution labeling and functional manipulation of specific neuron types in mouse brain by Cre-activated viral gene expression. PLoS ONE 3:e2005
  • Levskaya A, Weiner OD, Lim WA, Voigt CA. 2009. Spatiotemporal control of cell signalling using a light-switchable protein interaction. Nature 461:997-1001
  • Lima SQ, Hromádka T, Znamenskiy P, Zador AM. 2009. PINP: a new method of tagging neuronal populations for identification during in vivo electrophysiological recording. PLoS One 4:e6099
  • Lin JY, Lin MZ, Steinbach P, Tsien RY. 2009. Characterization of engineered channelrhodopsin variants with improved properties and kinetics. Biophys J 96:1803-14
  • Li X, Gutierrez DV, Hanson MG, Han J, Mark MD, et al. 2005. Fast noninvasive activation and inhibition of neural and network activity by vertebrate rhodopsin and green algae channelrhodopsin. Proc Natl Acad Sci U S A 102:17816-21
  • Nagel G, Ollig D, Fuhrmann M, Kateriya S, Musti AM, et al. 2002. Channelrhodopsin-1: a light-gated proton channel in green algae. Science 296:2395-8
  • Nagel G, Szellas T, Huhn W, Kateriya S, Adeishvili N, et al. 2003. Channelrhodopsin-2, a directly light-gated cation-selective membrane channel. Proc Natl Acad Sci U S A 100:13940-5
  • Nagel G, Szellas T, Kateriya S, Adeishvili N, Hegemann P, Bamberg E. 2005. Channelrhodopsins: directly light-gated cation channels. Biochem Soc Trans 33:863-6
  • Numano R, Szobota S, Lau AY, Gorostiza P, Volgraf M, et al. 2009. Nanosculpting reversed wavelength sensitivity into a photoswitchable iGluR. Proc Natl Acad Sci U S A 106:6814-9
  • Siegel MS, Isacoff EY. 1997. A genetically encoded optical probe of membrane voltage. Neuron 19:735-41
  • Szobota S, Gorostiza P, Del Bene F, Wyart C, Fortin DL, et al. 2007. Remote control of neuronal activity with a light-gated glutamate receptor. Neuron 54:535-45
  • Thyagarajan S, van Wyk M, Lehmann K, Löwel S, Feng G, Wässle H. 2010. Visual function in mice with photoreceptor degeneration and transgenic expression of channelrhodopsin 2 in ganglion cells. J Neurosci 30:8745-58
  • Zemelman BV, Lee GA, Ng M, Miesenböck G. 2002. Selective photostimulation of genetically chARGed neurons. Neuron 33:15-22
  • Zhang F, Prigge M, Beyrière F, Tsunoda SP, Mattis J, et al. 2008. Red-shifted optogenetic excitation: a tool for fast neural control derived from Volvox carteri. Nat Neurosci 11:631-3
  • Zhang F, Wang LP, Boyden ES, Deisseroth K. 2006. Channelrhodopsin-2 and optical control of excitable cells. Nat Methods 3:785-92
  • Zhang F, Wang LP, Brauner M, Liewald JF, Kay K, et al. 2007. Multimodal fast optical interrogation of neural circuitry. Nature 446:633-9
  • Zhao S, Cunha C, Zhang F, Liu Q, Gloss B, et al. 2008. Improved expression of halorhodopsin for light-induced silencing of neuronal activity. Brain Cell Biol
  • Zhu P, Narita Y, Bundschuh ST, Fajardo O, Schärer YP, et al. 2009. Optogenetic dissection of neuronal circuits in zebrafish using viral gene transfer and the Tet system. Front Neural Circuits 3:21
  • Zimmermann D, Zhou A, Kiesel M, Feldbauer K, Terpitz U, et al. 2008. Effects on capacitance by overexpression of membrane proteins. Biochem Biophys Res Commun 369:1022-6

Hardware

  • Airan RD, Hu ES, Vijaykumar R, Roy M, Meltzer LA, Deisseroth K. 2007. Integration of light-controlled neuronal firing and fast circuit imaging. Curr Opin Neurobiol 17:587-92
  • Andrasfalvy BK, Zemelman BV, Tang J, Vaziri A. 2010. Two-photon single-cell optogenetic control of neuronal activity by sculpted light. Proc Natl Acad Sci U S A 107:11981-6
  • Aravanis AM, Wang LP, Zhang F, Meltzer LA, Mogri MZ, et al. 2007. An optical neural interface: in vivo control of rodent motor cortex with integrated fiberoptic and optogenetic technology. J Neural Eng 4:S143-56
  • Ayling OG, Harrison TC, Boyd JD, Goroshkov A, Murphy TH. 2009. Automated light-based mapping of motor cortex by photoactivation of channelrhodopsin-2 transgenic mice. Nat Methods 6:219-24
  • Campagnola L, Wang H, Zylka MJ. 2008. Fiber-coupled light-emitting diode for localized photostimulation of neurons expressing channelrhodopsin-2. J Neurosci Methods 169:27-33
  • Cardin JA, Carlén M, Meletis K, Knoblich U, Zhang F, et al. 2010. Targeted optogenetic stimulation and recording of neurons in vivo using cell-type-specific expression of Channelrhodopsin-2. Nat Protoc 5:247-54
  • Clements IP, Gnade AG, Rush AD, Patten CD, Twomey MC, Kravitz AV. Miniaturized LED sources for in vivo optogenetic experimentation. Proceedings of SPIE (2012) Volume 8586. link
  • Gradinaru V, Thompson KR, Zhang F, Mogri M, Kay K, et al. 2007. Targeting and readout strategies for fast optical neural control in vitro and in vivo. J Neurosci 27:14231-8
  • Grossman N, Poher V, Grubb MS, Kennedy GT, Nikolic K, et al. 2010. Multi-site optical excitation using ChR2 and micro-LED array. J Neural Eng 7:16004
  • Leifer AM, Fang-Yen C, Gershow M, Alkema MJ, Samuel ADT. 2011. Optogenetic manipulation of neural activity in freely moving Caenorhabditis elegans. Nature Methods 8(2): 147-152. PDF from PMC
  • Miyawaki A, Llopis J, Heim R, McCaffery JM, Adams JA, et al. 1997. Fluorescent indicators for Ca2+ based on green fluorescent proteins and calmodulin. Nature 388:882-7
  • Papagiakoumou E, Anselmi F, Bègue A, de Sars V, Glückstad J, et al. 2010. Scanless two-photon excitation of channelrhodopsin-2. Nat Methods 7:848-54
  • Royer S, Zemelman BV, Barbic M, Losonczy A, Buzsáki G, Magee JC. 2010. Multi-array silicon probes with integrated optical fibers: light-assisted perturbation and recording of local neural circuits in the behaving animal. Eur J Neurosci
  • Zhang J, Laiwalla F, Kim JA, Urabe H, Van Wagenen R, et al. 2009. Integrated device for optical stimulation and spatiotemporal electrical recording of neural activity in light-sensitized brain tissue. J Neural Eng 6:055007
  • Zorzos AN, Boyden ES, Fonstad CG. 2010. A multi-waveguide implantable probe for light delivery to sets of distributed brain targets. Opt Lett 35:4133-5

Optogenetics and Behavior

  • Adamantidis AR, Zhang F, Aravanis AM, Deisseroth K, de Lecea L. 2007. Neural substrates of awakening probed with optogenetic control of hypocretin neurons. Nature 450:420-4
  • Aponte Y, Atasoy D, Sternson SM. 2010. AGRP neurons are sufficient to orchestrate feeding behavior rapidly and without training. Nat Neurosci
  • Arrenberg AB, Del Bene F, Baier H. 2009. Optical control of zebrafish behavior with halorhodopsin. Proc Natl Acad Sci U S A 106:17968-73
  • Carter ME, Yizhar O, Chikahisa S, Nguyen H, Adamantidis A, et al. 2010. Tuning arousal with optogenetic modulation of locus coeruleus neurons. Nat Neurosci
  • Challis C, Boulden J, Veerakumar A, Espallergues J, Vassoler FM, et al. 2013. Raphe GABAergic neurons mediate the acquisition of avoidance after social defeat. J Neurosci 33:13978-88
  • Claridge-Chang A, Roorda RD, Vrontou E, Sjulson L, Li H, et al. 2010. Writing memories with light-addressable reinforcement circuitry. Cell 139:405-15
  • Covington HE, Lobo MK, Maze I, Vialou V, Hyman JM, et al. 2010. Antidepressant effect of optogenetic stimulation of the medial prefrontal cortex. J Neurosci 30:16082-90
  • Gradinaru V, Mogri M, Thompson KR, Henderson JM, Deisseroth K. 2009. Optical deconstruction of parkinsonian neural circuitry. Science 324:354-9
  • Hägglund M, Borgius L, Dougherty KJ, Kiehn O. 2010. Activation of groups of excitatory neurons in the mammalian spinal cord or hindbrain evokes locomotion. Nat Neurosci 13:246-52
  • Huber D, Petreanu L, Ghitani N, Ranade S, Hromádka T, et al. 2008. Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice. Nature 451:61-4
  • Hwang RY, Zhong L, Xu Y, Johnson T, Zhang F, et al. 2007. Nociceptive neurons protect Drosophila larvae from parasitoid wasps. Curr Biol 17:2105-16
  • Johansen JP, Hamanaka H, Monfils MH, Behnia R, Deisseroth K, et al. 2010. Optical activation of lateral amygdala pyramidal cells instructs associative fear learning. Proc Natl Acad Sci U S A 107:12692-7
  • Kravitz AV, Freeze BS, Parker PR, Kay K, Thwin MT, et al. 2010. Regulation of parkinsonian motor behaviours by optogenetic control of basal ganglia circuitry. Nature 466:622-6
  • Lagali PS, Balya D, Awatramani GB, Münch TA, Kim DS, et al. 2008. Light-activated channels targeted to ON bipolar cells restore visual function in retinal degeneration. Nat Neurosci 11:667-75
  • Lima SQ, Miesenböck G. 2005. Remote control of behavior through genetically targeted photostimulation of neurons. Cell 121:141-52
  • Nagel G, Brauner M, Liewald JF, Adeishvili N, Bamberg E, Gottschalk A. 2005. Light activation of channelrhodopsin-2 in excitable cells of Caenorhabditis elegans triggers rapid behavioral responses. Curr Biol 15:2279-84
  • Schoonheim PJ, Arrenberg AB, Del Bene F, Baier H. 2010. Optogenetic localization and genetic perturbation of saccade-generating neurons in zebrafish. J Neurosci 30:7111-20
  • Schroll C, Riemensperger T, Bucher D, Ehmer J, Völler T, et al. 2006. Light-induced activation of distinct modulatory neurons triggers appetitive or aversive learning in Drosophila larvae. Curr Biol 16:1741-7
  • Thyagarajan S, van Wyk M, Lehmann K, Löwel S, Feng G, Wässle H. 2010. Visual function in mice with photoreceptor degeneration and transgenic expression of channelrhodopsin 2 in ganglion cells. J Neurosci 30:8745-58
  • Tomita H, Sugano E, Fukazawa Y, Isago H, Sugiyama Y, et al. 2009. Visual properties of transgenic rats harboring the channelrhodopsin-2 gene regulated by the thy-1.2 promoter. PLoS One 4:e7679
  • Tsai HC, Zhang F, Adamantidis A, Stuber GD, Bonci A, et al. 2009. Phasic firing in dopaminergic neurons is sufficient for behavioral conditioning. Science 324:1080-4
  • Wyart C, Del Bene F, Warp E, Scott EK, Trauner D, et al. 2009. Optogenetic dissection of a behavioural module in the vertebrate spinal cord. Nature 461:407-10

Optogenetics and Neural Circuitry

  • Adesnik H, Scanziani M. 2010. Lateral competition for cortical space by layer-specific horizontal circuits. Nature 464:1155-60
  • Cardin JA, Carlén M, Meletis K, Knoblich U, Zhang F, et al. 2009. Driving fast-spiking cells induces gamma rhythm and controls sensory responses. Nature 459:663-7
  • Challis C, Beck SG, Berton O. 2014. Optogenetic modulation of descending prefrontocortical inputs to the dorsal raphe bidirectionally bias socioaffective choices after social defeat. Front Behav Neurosci 8:43
  • Cruikshank SJ, Urabe H, Nurmikko AV, Connors BW. 2010. Pathway-specific feedforward circuits between thalamus and neocortex revealed by selective optical stimulation of axons. Neuron 65:230-45
  • Losonczy A, Zemelman BV, Vaziri A, Magee JC. 2010. Network mechanisms of theta related neuronal activity in hippocampal CA1 pyramidal neurons. Nat Neurosci 13:967-72
  • Petreanu L, Mao T, Sternson SM, Svoboda K. 2009. The subcellular organization of neocortical excitatory connections. Nature 457:1142-5
  • Sohal VS, Zhang F, Yizhar O, Deisseroth K. 2009. Parvalbumin neurons and gamma rhythms enhance cortical circuit performance. Nature 459:698-702.